Fine Read­ing. Proxi­mate and ul­ti­mate causes of bacterici­dal ac­tion of an­tibi­otics

by Elio

In a Per­spec­tive piece in Na­ture Re­views Mi­cro­bi­ol­ogy, Fer­nando Ba­quero of the Ra­mon y Ca­jal Uni­ver­sity Hos­pi­tal in Madrid and Bruce R. Levin of the An­tibi­otic Re­sis­tance Can­ter at Emory Uni­ver­sity present a most thought­ful es­say on the ways an­tibi­otics kill bac­te­ria (or don't). To ex­plain the cu­ri­ous ti­tle and what's be­hind it, let me quote their in­tro­duc­tory para­graph:

Fig­ure 1. Kirby-Bauer test of an­tibi­otic sus­cep­ti­bil­ity. Source

Cu­ri­ously, for the vast ma­jor­ity of an­tibi­otics, what is not known, and is sub­ject of some con­tro­versy, is how these drugs ac­tu­ally kill bac­te­ria and/or pre­vent their repli­ca­tion. For ex­am­ple, why do some ri­bo­some-tar­get­ing drugs, such as most but not all amino­gly­co­sides, rapidly kill bac­te­ria, whereas oth­ers, such as the macrolides, pre­vent repli­ca­tion and kill at low rates if at all? Why is in­hi­bi­tion of pro­tein syn­the­sis lethal in some cases and only sta­tic in oth­ers? It is use­ful to put this ques­tion into the con­text of what Ernst Mayr de­scribed as cause and ef­fect in evo­lu­tion­ary bi­ol­ogy. Mayr used 'prox­i­mate cau­sa­tion' to re­fer to im­me­di­ate fac­tors (for ex­am­ple, phys­i­ol­ogy or mu­ta­tion) of processes and 'ul­ti­mate cau­sa­tion' to re­fer to the 'fi­nal rea­sons' for the out­come (for ex­am­ple, nat­ural se­lec­tion or evo­lu­tion). We use these terms sim­i­larly to re­spec­tively re­fer to the pri­mary bio­chem­i­cal mech­a­nisms by which an­tibi­otics ex­ert their ac­tion (the tra­di­tional 'mech­a­nisms of ac­tion') and the fi­nal re­sult of the process (bac­te­ri­ci­dal ac­tion). We know a great deal about the prox­i­mate causes of an­tibi­otic ac­tion, how an­tibi­otics in­ter­act with the cell, but we know vastly less about the ul­ti­mate causes, why, when con­fronted with an­tibi­otics, bac­te­ria die, and why they do so at dif­fer­ent rates.

These clearly fun­da­men­tal ques­tions meet their match in this es­say. Writ­ten in an ac­ces­si­ble style, it pro­vides a great deal of in­ter­est­ing and use­ful in­for­ma­tion.

 

Other Posts

  • Golden Nuggets

    by Elio — Cop­per, ura­nium, gold, and other met­als are mined by bac­te­ria and ar­chaea, and this takes place on an in­dus­trial scale. Con­sor­tia of these or­gan­isms leach min­er­als from ores — even low-grade ores — and thus have com­mer­cial bless­ing. This is an old story. Rio Tinto, a river in South­ern Spain, has been known...

  • The Art of Mi­cro­bial Alchemy

    by Gemma Reguera — In 2001, Kashefi and col­lab­o­ra­tors pub­lished an ar­ti­cle in 'Ap­plied and En­vi­ron­men­tal Mi­cro­bi­ol­ogy' re­port­ing the sur­pris­ing find­ing that sev­eral iron-re­duc­ing mi­crobes can use gold as an elec­tron ac­cep­tor for their res­pi­ra­tion. These mi­cro­bial al­chemists in­cluded both mesophilic and ther­mophilic bac­te­ria...

  • Cyanobac­te­ria: Grow­ing a Green Fu­ture Around the Clock

    by Spencer Di­a­mond and Britt Fla­herty — With such fa­mous bac­te­ria as Es­cherichia coli and Bacil­lus sub­tilis hog­ging the stage, it can be hard for bugs like cyanobac­te­ria to en­ter the lime­light. How­ever, with­out E. coli and B. sub­tilis we would still be here to­day; with­out cyanobac­te­ria (or some­thing with sim­i­lar ca­pa­bil­i­ties) earth would be an anaer­o­bic…

  • Heat, Hy­dro­gen, and To­gas

    by Elio — Ex­tremophilic mi­crobes, es­pe­cially the ther­mophilic ones, are ex­ceed­ingly in­ter­est­ing for many in­dus­trial processes. And why not, be­ing that high tem­per­a­tures prompt faster en­zy­matic re­ac­tions. Present-day uses for such or­gan­isms in­clude the pro­duc­tion of polysaccharide‑, lipid‑, and pro­tein-de­grad­ing en­zymes among many. It is worth re­mem­ber­ing that this pur­suit was ini­ti­ated by...

  • Spy Gad­gets

    by Janie — Some bac­te­r­ial en­zymes have in­ter­est­ing char­ac­ter arcs. DNA poly­merase, cour­tesy of Ther­mus aquati­cus, soaks up the lime­light as an en­zyme pulled out of bac­te­ria and cata­pulted into mol­e­c­u­lar bi­ol­ogy star­dom. One en­zyme that is cer­tainly less-known is FbaB, which helps Strepto­coccus pyo­genes ad­here to and in­vade host cells...

  • The Charms of Cold

    by Elio — The up­com­ing "pro­tein spot­light" #209 by Vivi­enne Bail­lie Ger­rit­sen on ice-bind­ing pro­teins brings up the near magic things that hap­pen to mi­crobes in the cold. At a time when our worry is global warm­ing, it may be good to con­sider that some bac­te­ria do not shun cold habi­tat and thrive in such un­in­hab­it­able-sound­ing places as the...