By the Num­bers: Vi­ral Burst Size

by Rob Phillips and Ron Milo

Fig­ure 1. Source

Viruses pro­lif­er­ate by in­fect­ing cells and hi­jack­ing their repli­ca­tion and pro­tein syn­the­sis ma­chin­ery. Af­ter new vi­ral pro­teins are syn­the­sized and as­sem­bled, bursts of viruses are re­leased from the in­fected (and usu­ally soon to be dead) cells, start­ing the process all over again. The "vi­ral burst size" – the num­ber of viruses re­leased from each in­fected cell – al­ludes to the fact that of­ten virus emis­sion leads to ei­ther cell ly­sis (bac­te­rio­phage) or cell death (HIV in­fec­tion of T‑cells). The emis­sion of new viruses from an in­fected cell hence oc­curs as a burst of a char­ac­ter­is­tic num­bers of viruses, on time scales last­ing from min­utes to days, de­pend­ing upon the kind of virus and host. Burst sizes for dif­fer­ent viruses have a large range cor­re­spond­ing in turn with the range of dif­fer­ent sizes of the host cells. For ex­am­ple, SIV, a cousin and model for the HIV virus, is re­leased from in­fected T cells with a burst size of ≈50,000 (BNID 102377) whereas cyanobac­te­r­ial viruses have char­ac­ter­is­tic burst sizes of ≈40−80 (BNID 103247, 104841, 104842) and phage lambda and other phages (such as T4, T5 and T7) at­tack­ing bac­te­ria have burst sizes of ≈100−300. (BNID 105025, 105870).

Fig­ure 2. Source

One in­ter­est­ing way to gar­ner an im­pres­sion of the im­pact of a vi­ral in­fec­tion on the host me­tab­o­lism is by think­ing about the vol­ume taken up by the newly syn­the­sized viruses in com­par­i­son with the size of the host cell. In par­tic­u­lar, we ask what frac­tion of the host cell vol­ume is oc­cu­pied by all the viruses mak­ing up a vi­ral burst? These vol­umes can be thought of as a proxy for bio­mass and thus re­flect on the cell's re­sources that were seized. An SIV virion is roughly 100 nm in di­am­e­ter and the host cell has a cor­re­spond­ing di­am­e­ter of about 10 μm. Given these num­bers, 50,000 viri­ons thus rep­re­sent about 5% of the cell's vol­ume. In the case of bac­te­ria and the viruses that in­fect them, a T‑phage with ≈50 nm di­am­e­ter (BNID 105870) shows burst sizes of ≈200 in an E. coli cell, rep­re­sent­ing ≈2% of the vol­ume. There­fore, the char­ac­ter­is­tic vol­ume frac­tion taken up by the viruses in these two very dis­tinct cell types shows a much smaller range (100-fold). This may re­flect lim­its to how much bio­mass viruses can ex­tract from in­fected cells. In the ma­rine en­vi­ron­ment, which is of­ten de­pleted in phos­pho­rus that is mostly re­quired for nu­cleotides, it was sug­gested that the DNA sizes of the virus and host gov­ern the virion burst size as the virus uti­lizes the host DNA build­ing blocks (C. M. Brown et al., J. Mar. Bio. Ass. U.K., 86:491, 2006). The mea­sure­ments and es­ti­mates through­out this vi­gnette raise the very in­ter­est­ing ques­tion of what gov­erns the over­all burst size, as well as what frac­tion of the syn­the­sized vi­ral DNA and pro­teins ac­tu­ally make it into in­fec­tious viruses.

From Cell Bi­ol­ogy by the Num­bers, found here.

 

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